The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2033
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 312617
End posion on genome 312543
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
atttataatt
tRNA gene sequence 
GGGCGCATGGCCTAGCCTGGATAGGGCAACAGCCTCCTAAGCTGTAGATCAGGGGTCCAA
ATCCCCTTGCGCCCGtta
Downstream region at tRNA end position 
cctgttaccg
Secondary structure (Cloverleaf model)
>At2033	Arg	CCT
                   t      Gtta cctgttaccg
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     A - T          T A
                    T     T C C C C     A
    C C G A        G      | | | | |     A
  T         T C C G       A G G G G     C
  G         + | | |                 T C
  G         G G G C
    A T A          A     AGATC
                    A - T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCATGGCCTAGCCTGGATAGGGCAACAGCCTCCTAAGCTGTAGATCAGGGGTCCAA
ATCCCCTTGCGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK