The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2035
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 385411
End posion on genome 385338
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
atgtaacttc
tRNA gene sequence 
GCCCGAGTGGGGTAATTTGGATATCCTGGAGGCCTGCGGAGCCTCAGATCCGGGTTCGAA
TCCCGGCCCGGGCAtct
Downstream region at tRNA end position 
tcctagttaa
Secondary structure (Cloverleaf model)
>At2035	Arg	GCG
                   c      Atct tcctagttaa
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     A   C
                     G - C          T A
                    T     G G C C C     A
    T T A A        G      | | | | |     G
  T         T G G G       C C G G G     C
  G           | | +                 T T
  G         T C C T
    A T A          G     AGAT
                    G - C
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGAGTGGGGTAATTTGGATATCCTGGAGGCCTGCGGAGCCTCAGATCCGGGTTCGAA
TCCCGGCCCGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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