The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2037
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 433376
End posion on genome 433302
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
acctgatgtt
tRNA gene sequence 
GGGGTTGTAGCTTAGACAGGCTATAGCACTCGGCTGATAACCGAGAGGTCACCGGTTCGA
ATCCGGTCAACCCCAtac
Downstream region at tRNA end position 
tacttaaatt
Secondary structure (Cloverleaf model)
>At2037	Ile	GAT
                   t      Atac tacttaaatt
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C          T A
                    T     T G G C C     A
    C A G A        A      | | | | |     G
  A         T T C G       A C C G G     C
  G           | | |                 T T
  G         T A G C
    C T A          A     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTTGTAGCTTAGACAGGCTATAGCACTCGGCTGATAACCGAGAGGTCACCGGTTCGA
ATCCGGTCAACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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