The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2039
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 483188
End posion on genome 483116
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position
aaacagtgaa
tRNA gene sequence
GGGCCCGTAGTGTAAACGGATATCACAGGGGCCTCCGGAGCCCCTAATCCGGGTTCGATT
CCCGGCGGGCCCGttt
Downstream region at tRNA end position
aatttatccc
Secondary structure (Cloverleaf model)
>At2039	Arg	CCG
                   a      Gttt aatttatccc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T T
                    T     G G C C C     A
      A A A        A      | | | | |     G
    C       T G T G       C C G G G     C
    G         | | |                 T T
    G       T C A C
      A T A        A     TAAT
                    G - C
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTGTAAACGGATATCACAGGGGCCTCCGGAGCCCCTAATCCGGGTTCGATT
CCCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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