The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2040
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 708186
End posion on genome 708114
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
tagtttcatt
tRNA gene sequence 
GCCCCGGTAGTGTAGTGGCCTATCATACAGGCCTGTCGAGCCTGTGACATGGGTTCAAAT
CCCGTCCGGGGCGcct
Downstream region at tRNA end position 
tcattcgtaa
Secondary structure (Cloverleaf model)
>At2040	Asp	GTC
                   t      Gcct tcattcgtaa
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     T G C C C     A
      T G A        A      | + | | |     A
    G       T G T G       A T G G G     C
    G         | | +                 T T
    C       T C A T
      C T A        A     TGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGTGTAGTGGCCTATCATACAGGCCTGTCGAGCCTGTGACATGGGTTCAAAT
CCCGTCCGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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