The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2042
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 841252
End posion on genome 841180
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
cggatttagt
tRNA gene sequence 
GCCGCTGTAGCTCAGTTGGTAGAGCACTCGGCTGTTAACCGAGCGGTCATCGGTTCGAGA
CCGATCAGCGGCGtgg
Downstream region at tRNA end position 
ggatgtagct
Secondary structure (Cloverleaf model)
>At2042	Asn	GTT
                   t      Gtgg ggatgtagct
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C          A G
                    T     T A G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A T C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     CGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCTGTAGCTCAGTTGGTAGAGCACTCGGCTGTTAACCGAGCGGTCATCGGTTCGAGA
CCGATCAGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK