The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2043
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1021317
End posion on genome 1021245
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
cgcagaaaat
tRNA gene sequence 
GCCACTGTAGCTCAGTTGGTAGAGCAGCTGATTCGTAATCAGCAGGTCGGGGGATCGATG
CCCTCCAGTGGCTtat
Downstream region at tRNA end position 
tctcatagaa
Secondary structure (Cloverleaf model)
>At2043	Thr	CGT
                   t      Ttat tctcatagaa
                     G - C
                     C - G
                     C - G
                     A - T
                     C - G
                     T - A
                     G - C          G T
                    T     C T C C C     A
      T G A        A      | + | | |     G
    T       C T C G       G G G G G     C
    G       | | | |                 A T
    G       G A G C
      T A          A     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCACTGTAGCTCAGTTGGTAGAGCAGCTGATTCGTAATCAGCAGGTCGGGGGATCGATG
CCCTCCAGTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK