The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2044
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1061594
End posion on genome 1061497
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
caggttgcaa
tRNA gene sequence 
CCCGGCTTAGCTCAGCTGGTAGAGCGGCGGACTGTAGATCCGCAGGTCTCTGGTTCGAAT
CCGGAAGCCGGGAtct
Downstream region at tRNA end position 
tcattttatg
Secondary structure (Cloverleaf model)
>At2044	Tyr	GTA
                   a      Atct tcattttatg
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     C - G
                     T - A          T A
                    T     A G G C C     A
      C G A        A      | | + | |     G
    T       C T C G       T C T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGGCTTAGCTCAGCTGGTAGAGCGGCGGACTGTAGagggttcaacggtgaattcgccg
taATCCGCAGGTCTCTGGTTCGAATCCGGAAGCCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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