The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2045
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1089277
End posion on genome 1089194
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position
tctctagtcc
tRNA gene sequence
GCGGAGGTTGTCGAGACTGGCCAAAGGCGATGGATTCAGGGTCCATTCCCGCAGGGTTCG
AGGGTTCAAATCCCTCCCTCCGCAtta
Downstream region at tRNA end position
aaatgtcctg
Secondary structure (Cloverleaf model)
>At2045	Leu	CAG
                   c      Atta aaatgtcctg
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
    C A G A        T      | | | | |     A
  T         G C T G       G A G G G     C
  G           | + |                 T T
  G         A G G C
    C C A A        G     TCCCGCAGGGTTC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGGTTGTCGAGACTGGCCAAAGGCGATGGATTCAGGGTCCATTCCCGCAGGGTTCG
AGGGTTCAAATCCCTCCCTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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