The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2046
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1098176
End posion on genome 1098092
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
agctatggaa
tRNA gene sequence 
GCGGAGGTTGTCGAGACTGGCCAAAGGCGATGGATTTAGGGTCCATTCCCGCAGGGTTTC
GAGGGTTCAAATCCCTCCCTCCGCAtct
Downstream region at tRNA end position 
agtaatttgg
Secondary structure (Cloverleaf model)
>At2046	Leu	TAG
                   a      Atct agtaatttgg
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
    C A G A        T      | | | | |     A
  T         G C T G       G A G G G     C
  G           | + |                 T T
  G         A G G C
    C C A A        G     TCCCGCAGGGTTTC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGGTTGTCGAGACTGGCCAAAGGCGATGGATTTAGGGTCCATTCCCGCAGGGTTTC
GAGGGTTCAAATCCCTCCCTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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