The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2047
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1131366
End posion on genome 1131285
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
caatgagtga
tRNA gene sequence 
GCGGGGATGGCCCAGTGGTAAGGCGGCAGCCTGCTAAGCTGTTTCTCGTATGAGAGCGTG
GGTTCGAATCCCACTCCCCGCGctg
Downstream region at tRNA end position 
aacgatagta
Secondary structure (Cloverleaf model)
>At2047	Ser	GCT
                   a      Gctg aacgatagta
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C A C C C     A
        G A        G      | | | | |     G
      T     C C C G       G T G G G     C
      G       | | |                 T T
      G     A G G C
        T A        G     TTCTCGTATGAGAGC
                    G + T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGATGGCCCAGTGGTAAGGCGGCAGCCTGCTAAGCTGTTTCTCGTATGAGAGCGTG
GGTTCGAATCCCACTCCCCGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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