The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2049
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1247190
End posion on genome 1247118
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position
cacctattaa
tRNA gene sequence
GGGCTCGTAGTCCAGTGGTTACGACGTCGCCCTTACAAGGCGGAGATCACCGGTTCGAAT
CCGGTCGGGCCCAttc
Downstream region at tRNA end position
tacttgaaaa
Secondary structure (Cloverleaf model)
>At2049	Val	TAC
                   a      Attc tacttgaaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     T G G C C     A
      T G A        A      | | | | |     G
    G       C C T G       A C C G G     C
    G         | | |                 T T
    T       C G A C
      T A          G     AGATC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGTCCAGTGGTTACGACGTCGCCCTTACAAGGCGGAGATCACCGGTTCGAAT
CCGGTCGGGCCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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