The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2051
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1351095
End posion on genome 1351023
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
acaggtggga
tRNA gene sequence 
GCAGGTGTGGTGTAGCCTGGTAGCACGAGAGCCTTCCAAGCTTTCGACTCGGGTCCAAAT
CCCGACACCTGCAtga
Downstream region at tRNA end position 
gattaacgca
Secondary structure (Cloverleaf model)
>At2051	Gly	TCC
                   a      Atga gattaacgca
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     A G C C C     A
      C G A        G      | | | | |     A
    C       T G T G       T C G G G     C
    T       + | | |                 T C
    G       G C A C
      G T A        G     CGAC
                    A - T
                    G + T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGTGTGGTGTAGCCTGGTAGCACGAGAGCCTTCCAAGCTTTCGACTCGGGTCCAAAT
CCCGACACCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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