The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2052
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1494826
End posion on genome 1494755
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
aaggtttgaa
tRNA gene sequence 
GGGCCGGTAGATCAGAGGTAGATCGCTTCCTTGGCATGGAAGAGGCCATGGGTTCAAATC
CCATCCGGTCCAtat
Downstream region at tRNA end position 
gatactgagt
Secondary structure (Cloverleaf model)
>At2052	Ala	GGC
                   a      Atat gatactgagt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     T A C C C     A
        G A        A      | | | | |     A
      A     C T A G       A T G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGCC
                    C - G
                    T - A
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGATCAGAGGTAGATCGCTTCCTTGGCATGGAAGAGGCCATGGGTTCAAATC
CCATCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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