The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2053
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1521804
End posion on genome 1521722
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
tatttcctat
tRNA gene sequence 
GTCGGGGTAGCCTAGCCCGGTAAGGCGGTAGACTCGAGATCTACTGCTCTCGTAGCTCGG
GAGTTCAAATCTCCCCCCCGACGcat
Downstream region at tRNA end position 
agcattatta
Secondary structure (Cloverleaf model)
>At2053	Ser	CGA
                   t      Gcat agcattatta
                     G - C
                     T - A
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C C C T C     A
      C G A        A      | | | | |     A
    C       T C C G       G G G A G     C
    C       | | | |                 T T
    G       A G G C
      G T A        G     TGCTCTCGTAGCTC
                    G - C
                    T - A
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCGGGGTAGCCTAGCCCGGTAAGGCGGTAGACTCGAGATCTACTGCTCTCGTAGCTCGG
GAGTTCAAATCTCCCCCCCGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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