The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2055
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 51721
End posion on genome 51794
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
ataaagcgat
tRNA gene sequence 
GGGCCCGTGGTCTAGCTGGTTATGACGTCGCCTTGACATGGCGGAGGCCATGAGTTCGAA
TCTCATCGGGCCCActc
Downstream region at tRNA end position 
atcgttttct
Secondary structure (Cloverleaf model)
>At2055	Val	GAC
                   t      Actc atcgttttct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C T C     A
      C G A        G      | | | | |     G
    T       T C T G       A T G A G     C
    G         | | |                 T T
    G       T G A C
      T T A        G     AGGCC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       T
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGTCTAGCTGGTTATGACGTCGCCTTGACATGGCGGAGGCCATGAGTTCGAA
TCTCATCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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