The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2056
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 55174
End posion on genome 55246
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
atctcagaac
tRNA gene sequence 
AGTCCCATGGGGTAGAGGTCAATCCTGCTGGACTTTGGATCCGGCGACACCGGTTCGAAT
CCGGTTGGGACTAtca
Downstream region at tRNA end position 
gttttaaaaa
Secondary structure (Cloverleaf model)
>At2056	Gln	TTG
                   c      Atca gttttaaaaa
                     A - T
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     T G G C C     A
      A G A        G      | | | | |     G
    G       T G G G       A C C G G     C
    G         | | +                 T T
    T       T C C T
      C A A        G     CGAC
                    C - G
                    T + G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGTCCCATGGGGTAGAGGTCAATCCTGCTGGACTTTGGATCCGGCGACACCGGTTCGAAT
CCGGTTGGGACTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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