The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2057
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 72816
End posion on genome 72889
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
tcatgcaaat
tRNA gene sequence 
GCCGCCGTGGCTTAGCCCGGCAAAGCGGCTGATTCGTAATCAGCAGATCGGGGGTTCAAA
TCCCTCCGGCGGCTtga
Downstream region at tRNA end position 
agtttatttt
Secondary structure (Cloverleaf model)
>At2057	Thr	CGT
                   t      Ttga agtttatttt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | + | | |     A
    C       T T C G       G G G G G     C
    C       | | | |                 T T
    G       A A G C
      G C A        G     AGATC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTGGCTTAGCCCGGCAAAGCGGCTGATTCGTAATCAGCAGATCGGGGGTTCAAA
TCCCTCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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