The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2060
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 320701
End posion on genome 320777
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
gcaagtagaa
tRNA gene sequence 
GCCCCTGTGGCTCAGTTGGCTAGAGCGGCTGACATGTAATCAGCAGTGCGGTAGTTCAAA
TCTATCCGGGGGCTCCA
Downstream region at tRNA end position 
tattatccaa
Secondary structure (Cloverleaf model)
>At2060	Thr	TGT
                   a      TCCA tattatccaa
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     T + G
                     G - C          T A
                    T     C T A T C     A
      T G A        G      | + | | |     A
    T       C T C G       G G T A G     C
    G       | | | |                 T T
    G       G A G C
      C T A        G     AGTGC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  A       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCTGTGGCTCAGTTGGCTAGAGCGGCTGACATGTAATCAGCAGTGCGGTAGTTCAAA
TCTATCCGGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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