The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2061
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 320917
End posion on genome 320990
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
cgcttacaat
tRNA gene sequence 
GCCTCTGTGGCTTAGCCCGGTATAGCGGCTGACTTGTAATCAGCAGGTCGCGAGTTCAAA
TCTCGCCGGAGGCTctt
Downstream region at tRNA end position 
tttactttta
Secondary structure (Cloverleaf model)
>At2061	Thr	TGT
                   t      Tctt tttactttta
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     T + G
                     G - C          T A
                    T     C G C T C     A
      C G A        G      | | | | |     A
    C       T T C G       G C G A G     C
    C         | | |                 T T
    G       T A G C
      G T A        G     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCTGTGGCTTAGCCCGGTATAGCGGCTGACTTGTAATCAGCAGGTCGCGAGTTCAAA
TCTCGCCGGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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