The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2062
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 611687
End posion on genome 611771
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
agcatcgttt
tRNA gene sequence 
GCAGGGGTTGCCAAGTCAGGTCAAAGGCGCAGGATTCAGGGTCCTGTCTCGAAGGGGTTC
GCCGGTTCGAATCCGGCCCCCTGCActa
Downstream region at tRNA end position 
acaagttttt
Secondary structure (Cloverleaf model)
>At2062	Leu	CAG
                   t      Acta acaagttttt
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G G C C     A
    C T G A        T      | | | | |     G
  A         A C C G       G C C G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTCGAAGGGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGGTTGCCAAGTCAGGTCAAAGGCGCAGGATTCAGGGTCCTGTCTCGAAGGGGTTC
GCCGGTTCGAATCCGGCCCCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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