The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2065
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 961978
End posion on genome 962050
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ataccaacaa
tRNA gene sequence 
GCCCTGTTAGCTCAGTTGGGAGAGCGCCAGACTGAAGATCTGGATGTCGCTGGTTCAAGT
CCGGCACAGGGCAttt
Downstream region at tRNA end position 
ctccttataa
Secondary structure (Cloverleaf model)
>At2065	Phe	GAA
                   a      Attt ctccttataa
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     G - C
                     T - A          T G
                    T     C G G C C     A
      T G A        A      | | + | |     A
    T       C T C G       G C T G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     ATGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCTGTTAGCTCAGTTGGGAGAGCGCCAGACTGAAGATCTGGATGTCGCTGGTTCAAGT
CCGGCACAGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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