The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2066
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 1009999
End posion on genome 1010070
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position
tttttcatgc
tRNA gene sequence
GCGGCTATGGTCTAGTGGCTATGACATGAGCTTCCCAAGCTCGAAGTCCGGGTTCAATTC
CCGGTAGCCGCAtcg
Downstream region at tRNA end position
catattttat
Secondary structure (Cloverleaf model)
>At2066	Gly	CCC
                   c      Atcg catattttat
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T T
                    T     G G C C C     A
      T G A        G      | | | | |     A
    G       T C T G       C C G G G     C
    G         | | |                 T T
    C       T G A C
      T A          A     AAGT
                    T + G
                    G - C
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCTATGGTCTAGTGGCTATGACATGAGCTTCCCAAGCTCGAAGTCCGGGTTCAATTC
CCGGTAGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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