The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2069
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 1335580
End posion on genome 1335654
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
acttttagac
tRNA gene sequence 
GCTCCGGTAGTGTAGTCCGGCCAATCATGTCGGCCTTTCGAGCCGACGACTCGGGTTCGA
ATCCCGACCGGAGCAtta
Downstream region at tRNA end position 
gtttttttag
Secondary structure (Cloverleaf model)
>At2069	Glu	TTC
                   c      Atta gtttttttag
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     A G C C C     A
    C T G A        A      | | | | |     G
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTAGTGTAGTCCGGCCAATCATGTCGGCCTTTCGAGCCGACGACTCGGGTTCGA
ATCCCGACCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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