The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2071
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 1552504
End posion on genome 1552575
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
tcgtcaaaac
tRNA gene sequence 
GCCCCTATAGGGTAGTGGATATCCTTGGAGCCTCCGGAGCTCTAGACCGGGGTTCGAATC
CCCGTGGGGGCGcta
Downstream region at tRNA end position 
aaagttttaa
Secondary structure (Cloverleaf model)
>At2071	Arg	CCG
                   c      Gcta aaagttttaa
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     T + G
                     A - T          T A
                    T     G C C C C     A
      T G A        A      | | | | |     G
    G       T G G G       C G G G G     C
    G         | | +                 T T
    A       T C C T
      T A          T     AGAC
                    G + T
                    G - C
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCTATAGGGTAGTGGATATCCTTGGAGCCTCCGGAGCTCTAGACCGGGGTTCGAATC
CCCGTGGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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