The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2072
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 1806069
End posion on genome 1806143
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
agtcaaagac
tRNA gene sequence 
GGGACAATGGGGTAGCTTGGTCCATCCTCGAGCGTTTGGGACGCTTGGACCCCAGTTCAA
ATCTGGGTTGTCCCAtaa
Downstream region at tRNA end position 
aaaatttggg
Secondary structure (Cloverleaf model)
>At2072	Pro	TGG
                   c      Ataa aaaatttggg
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     A - T
                     A - T          T A
                    T     G G G T C     A
    T C G A        G      | | | | |     A
  T         T G G G       C C C A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        C     GGAC
                    G + T
                    A - T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACAATGGGGTAGCTTGGTCCATCCTCGAGCGTTTGGGACGCTTGGACCCCAGTTCAA
ATCTGGGTTGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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