The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2073
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 1989900
End posion on genome 1989971
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
ctacacattt
tRNA gene sequence 
GGGCACGTAGATCAGGGGTAGATCGCTTCCTTGGCATGGAAGAGGCCTCGGGTTCAATTC
CCGACGTGTCCActa
Downstream region at tRNA end position 
agtttttcga
Secondary structure (Cloverleaf model)
>At2073	Ala	GGC
                   t      Acta agtttttcga
                     G - C
                     G - C
                     G + T
                     C - G
                     A - T
                     C - G
                     G - C          T T
                    T     A G C C C     A
        G A        A      | | | | |     A
      G     C T A G       T C G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGCC
                    C - G
                    T - A
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCACGTAGATCAGGGGTAGATCGCTTCCTTGGCATGGAAGAGGCCTCGGGTTCAATTC
CCGACGTGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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