The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2074
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2084945
End posion on genome 2085017
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
attgcctcgg
tRNA gene sequence 
GGGCTTGTAGCTCAGTTGGAAGAGCGCCGCCTTTGCAAGGCGGAGGCCCTGGGTTCAAAT
CCCAGCAAGTCCActa
Downstream region at tRNA end position 
ccatacactg
Secondary structure (Cloverleaf model)
>At2074	Ala	TGC
                   g      Acta ccatacactg
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     T - A
                     G - C          T A
                    T     G A C C C     A
      T G A        A      | | | | |     A
    T       C T C G       C T G G G     C
    G       | | | |                 T T
    G       G A G C
      A A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTAGCTCAGTTGGAAGAGCGCCGCCTTTGCAAGGCGGAGGCCCTGGGTTCAAAT
CCCAGCAAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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