The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2076
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2572367
End posion on genome 2572450
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ctgtcatatt
tRNA gene sequence 
GTCGCGGTATCCAAGCCTGGTATGGAGCAGGTTTGCTAAACCTGTGCTCGAAAGAGCTCC
GGAGTTCAAATCTCCGCCGCGGCGctt
Downstream region at tRNA end position 
tccttattac
Secondary structure (Cloverleaf model)
>At2076	Ser	GCT
                   t      Gctt tccttattac
                     G - C
                     T + G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G C C T C     A
      C G A        A      | | | | |     A
    C       A C C T       C G G A G     C
    T       | | | |                 T T
    G       T G G A
      G T A        G     TGCTCGAAAGAGCTC
                    C - G
                    A - T
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCGCGGTATCCAAGCCTGGTATGGAGCAGGTTTGCTAAACCTGTGCTCGAAAGAGCTCC
GGAGTTCAAATCTCCGCCGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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