The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2077
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2695133
End posion on genome 2695207
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
acgcagattt
tRNA gene sequence 
GGGCGGGTCGCCTAGCCAGGACATAGCGCCGGCCTCCTAAGCCGGATACCGTGGGTTCGA
ATCCCACCTCGCCCGctg
Downstream region at tRNA end position 
gcttttaggg
Secondary structure (Cloverleaf model)
>At2077	Arg	CCT
                   t      Gctg gcttttaggg
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G + T
                     G - C          T A
                    T     C A C C C     A
    C C G A        C      | | | | |     G
  A         T C C G       G T G G G     C
  G             | |                 T T
  G         T A G C
    A C A          G     ATACC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGGGTCGCCTAGCCAGGACATAGCGCCGGCCTCCTAAGCCGGATACCGTGGGTTCGA
ATCCCACCTCGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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