The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2078
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2810201
End posion on genome 2810286
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
catcttttat
tRNA gene sequence 
GCTGAGGTAGCCAAGTGGACTACGGCGGCAGCCTTGAGAGCTGTTGAGGCGCAAGTCTCG
CGCGGGTTCGAATCCCTCCCTCAGCGctg
Downstream region at tRNA end position 
ttattttaaa
Secondary structure (Cloverleaf model)
>At2078	Ser	TGA
                   t      Gctg ttattttaaa
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
      T G A        A      |   | | |     G
    G       A C C G       G C G G G     C
    G         | | |                 T T
    A       C G G C
      C T A        G     TGAGGCGCAAGTCTCGC
                    G + T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGAGGTAGCCAAGTGGACTACGGCGGCAGCCTTGAGAGCTGTTGAGGCGCAAGTCTCG
CGCGGGTTCGAATCCCTCCCTCAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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