The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2079
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2821338
End posion on genome 2821433
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cagagatgtc
tRNA gene sequence 
GGGCCCGTAGCTTAGCCAGGTCGGAGCGCTCGGCTGATAACCGAGAGGTCCTGCGTTCAA
ATCGCAGCGGGCCCAtca
Downstream region at tRNA end position 
tctcacgacg
Secondary structure (Cloverleaf model)
>At2079	Ile	GAT
                   c      Atca tctcacgacg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G A C G C     A
    C C G A        A      | | | | |     A
  A         T T C G       C T G C G     C
  G         + | | |                 T T
  G         G A G C
    T C G          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCCAGGTCGGAactgctcaaaagcagcgacaaGCGCTCGGCTGATA
ACCGAGAGGTCCTGCGTTCAAATCGCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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