The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2080
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2821549
End posion on genome 2821644
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
aggtcattca
tRNA gene sequence 
GGGCCCGTAGCTTAGCCAGGTCGGAGCGCTCGGCTGATAACCGAGAGGTCCTGCGTTCAA
ATCGCAGCGGGCCCAtca
Downstream region at tRNA end position 
cttacaataa
Secondary structure (Cloverleaf model)
>At2080	Ile	GAT
                   a      Atca cttacaataa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G A C G C     A
    C C G A        A      | | | | |     A
  A         T T C G       C T G C G     C
  G         + | | |                 T T
  G         G A G C
    T C G          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGCCAGGTCGGAactgctcaaaagcagcgacaaGCGCTCGGCTGATA
ACCGAGAGGTCCTGCGTTCAAATCGCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK