The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2081
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2882934
End posion on genome 2883011
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
aagatgcgtt
tRNA gene sequence 
GGGATCGTGGGGTAGCCTGGTCCATCCTTTCGCGTTCGGGACGCGGAAACCTGAGTTCAA
ATCTCAGCGATCCCACCA
Downstream region at tRNA end position 
accatcttta
Secondary structure (Cloverleaf model)
>At2081	Pro	CGG
                   t      ACCA accatcttta
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     C - G
                     G - C          T A
                    T     G A C T C     A
    C C G A        G      | | | | |     A
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        T     AAAC
                    T + G
                    C - G
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGATCGTGGGGTAGCCTGGTCCATCCTTTCGCGTTCGGGACGCGGAAACCTGAGTTCAA
ATCTCAGCGATCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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