The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2082
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 141432
End posion on genome 141358
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
caacagtaat
tRNA gene sequence 
GCTCCGATAGTGTAGACCGGCCAATCATGACGGACTCTCACTCCGTCGACTGGGGTTCAA
ATCCCCATCGGAGCActg
Downstream region at tRNA end position 
ataaaaaagc
Secondary structure (Cloverleaf model)
>At2082	Glu	CTC
                   t      Actg ataaaaaagc
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     A C C C C     A
    C A G A        A      | | | | |     A
  C         T G T G       T G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGATAGTGTAGACCGGCCAATCATGACGGACTCTCACTCCGTCGACTGGGGTTCAA
ATCCCCATCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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