The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2085
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 215563
End posion on genome 215489
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
tcgcagggct
tRNA gene sequence 
GGGCTCGTGGCTTAGTCAGGATATAGCACCGGCCTTCTAAGCCGGGGGTCGTGGGTTCGA
ATCCCACCGGGCCCGcta
Downstream region at tRNA end position 
aacgtttcct
Secondary structure (Cloverleaf model)
>At2085	Arg	TCT
                   t      Gcta aacgtttcct
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C T G A        G      | | | | |     G
  A         T T C G       G T G G G     C
  G           | | |                 T T
  G         T A G C
    A T A          A     GGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGCTTAGTCAGGATATAGCACCGGCCTTCTAAGCCGGGGGTCGTGGGTTCGA
ATCCCACCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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