The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2086
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 297696
End posion on genome 297619
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
agtacgttct
tRNA gene sequence 
GGGGCCATAGGGTAGACTGGTCCATCCTTCAAGACTGGGGGTCTTGAGACCCCGATTCAA
ATTCGGGTGGCCCCACCA
Downstream region at tRNA end position 
attctattaa
Secondary structure (Cloverleaf model)
>At2086	Pro	GGG
                   t      ACCA attctattaa
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     A - T          T A
                    T     G G G C T     A
    C A G A        A      | | | | |     A
  T         T G G G       C C C G A     C
  G           | | +                 T T
  G         T C C T
    T C C A        T     AGAC
                    C - G
                    A - T
                    A - T
                    G - C
                    A - T
                  C       G
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCATAGGGTAGACTGGTCCATCCTTCAAGACTGGGGGTCTTGAGACCCCGATTCAA
ATTCGGGTGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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