The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2087
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 357612
End posion on genome 357528
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
ttttcgagat
tRNA gene sequence 
GCGGGGGTAGCCCAGACAGGTCAAAGGCGCAGGATTGAGGGTCCTGTTCCGAAGGGATTC
GCGAGTTCAAATCTCGTCCCCCGCActa
Downstream region at tRNA end position 
gctttagctt
Secondary structure (Cloverleaf model)
>At2087	Leu	GAG
                   t      Acta gctttagctt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C T C     A
    C A G A        A      + | | | |     A
  A         C C C G       G C G A G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TTCCGAAGGGATTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTAGCCCAGACAGGTCAAAGGCGCAGGATTGAGGGTCCTGTTCCGAAGGGATTC
GCGAGTTCAAATCTCGTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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