The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2088
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 397738
End posion on genome 397666
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
tcggcgaaac
tRNA gene sequence 
AGCCCCGTAGTGTAGCGGTCAATCATAGGGGACTCTGGATCCTTTGACTTCGGTTCGAAT
CCGAACGGGGCTAtga
Downstream region at tRNA end position 
tactcttaag
Secondary structure (Cloverleaf model)
>At2088	Gln	CTG
                   c      Atga tactcttaag
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     A A G C C     A
      C G A        A      | | | | |     G
    G       T G T G       T T C G G     C
    G         | | +                 T T
    T       T C A T
      C A A        A     TGAC
                    G + T
                    G + T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCCGTAGTGTAGCGGTCAATCATAGGGGACTCTGGATCCTTTGACTTCGGTTCGAAT
CCGAACGGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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