The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2089
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 633281
End posion on genome 633197
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ttatcagcag
tRNA gene sequence 
GCGGGGGTAACCAAGTCAGGCCAAAGGTGCAGGACTTAAGATCCTGTCGCGAAGGCGTTC
AGGGGTTCGAATCCCTTCCCCCGCActt
Downstream region at tRNA end position 
accctaataa
Secondary structure (Cloverleaf model)
>At2089	Leu	TAA
                   g      Actt accctaataa
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C T G A        A      | + | | |     G
  A         A C C A       A G G G G     C
  G           | | |                 T T
  G         A G G T
    C C A A        G     TCGCGAAGGCGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTAACCAAGTCAGGCCAAAGGTGCAGGACTTAAGATCCTGTCGCGAAGGCGTTC
AGGGGTTCGAATCCCTTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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