The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2090
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 638133
End posion on genome 638050
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gtaacttttt
tRNA gene sequence 
GCCGGGGTAGTCTAGTGGTAAGGCGCAAGCCTGGAAAGCTTGTGAGGTGCAAATCTCTCA
GGAGTTCAAGTCTCCTCCCCGGCGctt
Downstream region at tRNA end position 
taaacaattt
Secondary structure (Cloverleaf model)
>At2090	Ser	GGA
                   t      Gctt taaacaattt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     T C C T C     A
        G A        A      | | | | |     A
      T     T C T G       A G G A G     C
      G     | | + |                 T T
      G     A G G C
        T A        G     TGAGGTGCAAATCTCTC
                    C - G
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGTCTAGTGGTAAGGCGCAAGCCTGGAAAGCTTGTGAGGTGCAAATCTCTCA
GGAGTTCAAGTCTCCTCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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