The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2091
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 835477
End posion on genome 835404
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
attattgatg
tRNA gene sequence 
GGGCCTGTGGTCTAGCTGGCTATGACGTCGCCTTCACACGGCGGAGGTCAGGGGTTCGAA
TCCCTTCGGGCCCActa
Downstream region at tRNA end position 
gtttgttttg
Secondary structure (Cloverleaf model)
>At2091	Val	CAC
                   g      Acta gtttgttttg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T + G
                     G - C          T A
                    T     T T C C C     A
      C G A        G      | + | | |     G
    T       T C T G       A G G G G     C
    G         | | |                 T T
    G       T G A C
      C T A        G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCTGTGGTCTAGCTGGCTATGACGTCGCCTTCACACGGCGGAGGTCAGGGGTTCGAA
TCCCTTCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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