The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2092
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 938696
End posion on genome 938612
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
tgcataacac
tRNA gene sequence 
GCGGGGGTAGCCCAGCCAGGTCAAAGGCGTAGGACTTAGGATCCTATCTCGAAGGAGTTC
GTGCGTTCGAATCGCACCCCCCGCActt
Downstream region at tRNA end position 
ggaaaaaaag
Secondary structure (Cloverleaf model)
>At2092	Leu	TAG
                   c      Actt ggaaaaaaag
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C G C     A
    C C G A        A      | | | | |     G
  A         C C C G       G T G C G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTCGAAGGAGTTC
                    T - A
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTAGCCCAGCCAGGTCAAAGGCGTAGGACTTAGGATCCTATCTCGAAGGAGTTC
GTGCGTTCGAATCGCACCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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