The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2098
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 1654068
End posion on genome 1653992
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
tattcggcgt
tRNA gene sequence 
GGGCCCGTGGCTCAGTCAGGCAGAGCGGCGGACTCTTAATCCGCATGCCATGGGTTCAAA
TCCCATCGGGCCCGCCA
Downstream region at tRNA end position 
aaaactaaca
Secondary structure (Cloverleaf model)
>At2098	Lys	CTT
                   t      GCCA aaaactaaca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C C C     A
      T G A        G      | | | | |     A
    C       C T C G       A T G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     ATGCC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTCAGTCAGGCAGAGCGGCGGACTCTTAATCCGCATGCCATGGGTTCAAA
TCCCATCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK