The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2099
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 1719113
End posion on genome 1719041
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
tgttgctttt
tRNA gene sequence 
GCCGGGATGGGGTAGTTGGTCATCCTACGGGACTGTGGATCCCATGAGCCGGGTTCGAAT
CCCGGTCCCGGCCctt
Downstream region at tRNA end position 
acatcatcaa
Secondary structure (Cloverleaf model)
>At2099	His	GTG
                   t      Cctt acatcatcaa
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
      T G A        G      | | | | |     G
    T       T G G G       C C G G G     C
    G         | | +                 T T
    G       T C C T
      T C A        A     TGAG
                    C   A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATGGGGTAGTTGGTCATCCTACGGGACTGTGGATCCCATGAGCCGGGTTCGAAT
CCCGGTCCCGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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