The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2100
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 1766224
End posion on genome 1766152
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
aattctggat
tRNA gene sequence 
GCCTCGGTGGCTTAGCCGGCATAGCGCGTCCTTGGTAAGGACGAGGTCGCGAGTTCAAAT
CTCGCCCGAGGCTcta
Downstream region at tRNA end position 
aaactaattc
Secondary structure (Cloverleaf model)
>At2100	Thr	GGT
                   t      Tcta aaactaattc
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T A
                    T     C G C T C     A
      C G A        G      | | | | |     A
    C       T T C G       G C G A G     C
    G         | | |                 T T
    G       T A G C
      C A          G     AGGTC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTGGCTTAGCCGGCATAGCGCGTCCTTGGTAAGGACGAGGTCGCGAGTTCAAAT
CTCGCCCGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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