The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2101
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 1871705
End posion on genome 1871634
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
acagagacgt
tRNA gene sequence 
GCCCCGATAGGGTAGTGGATATCCTTGAAGCCTGCGGAGCTTTAGACCTGGGTTCGAATC
CCAGTCGGGGCGctt
Downstream region at tRNA end position 
taaagttttt
Secondary structure (Cloverleaf model)
>At2101	Arg	GCG
                   t      Gctt taaagttttt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     G A C C C     A
      T G A        A      | | | | |     G
    G       T G G G       C T G G G     C
    G         | | +                 T T
    A       T C C T
      T A          T     AGAC
                    G + T
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGATAGGGTAGTGGATATCCTTGAAGCCTGCGGAGCTTTAGACCTGGGTTCGAATC
CCAGTCGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK