The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2104
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2562232
End posion on genome 2562158
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gaaatgcgat
tRNA gene sequence 
GCGCCGGTAGTGTAGTGGTTATCACTGTAGCTTGCCAAGCTATAGACTCGGGTTCAATTC
CCGACCGGCGCACCA
Downstream region at tRNA end position 
ccaaaaaatt
Secondary structure (Cloverleaf model)
>At2104	Gly	GCC
                   t      ACCA ccaaaaaatt
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T T
                    T     A G C C C     A
      T G A        A      | | | | |     A
    G       T G T G       T C G G G     C
    G         | | |                 T T
    T       T C A C
      T A          T     AGAC
                    G + T
                    T - A
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCGGTAGTGTAGTGGTTATCACTGTAGCTTGCCAAGCTATAGACTCGGGTTCAATTC
CCGACCGGCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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