The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2107
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2852207
End posion on genome 2852113
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
acaggacaat
tRNA gene sequence 
CCCGTCCTAGCTCAGCCTGGTCAGAGCGGTCGGCTGTAGACCGACAGGTCCCCGATTCAA
ATTCGGGGGACGGGAcct
Downstream region at tRNA end position 
tttcctcatt
Secondary structure (Cloverleaf model)
>At2107	Tyr	GTA
                   t      Acct tttcctcatt
                     C - G
                     C - G
                     C - G
                     G - C
                     T - A
                     C - G
                     C - G          T A
                    T     G G G C T     A
    C C G A        A      | | | | |     A
  T         C T C G       C C C G A     C
  G         | | | |                 T T
  G         G A G C
    T C A          G     AGGTC
                    G - C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGTCCTAGCTCAGCCTGGTCAGAGCGGTCGGCTGTAGaccttaatacgactgcggaaA
CCGACAGGTCCCCGATTCAAATTCGGGGGACGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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