The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2108
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 2932335
End posion on genome 2932262
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
catccggaga
tRNA gene sequence 
GGGCTCATAGCTCAGTTAGGTAGAGCGCCTGGCTTTTAACCAGGCGGCCTGGGGTTCAAA
TCCCCATGAGCCCGctc
Downstream region at tRNA end position 
accctatatt
Secondary structure (Cloverleaf model)
>At2108	Lys	TTT
                   a      Gctc accctatatt
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     A - T          T A
                    T     A C C C C     A
      T G A        A      | | | | |     A
    T       C T C G       T G G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     CGGCC
                    C - G
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCATAGCTCAGTTAGGTAGAGCGCCTGGCTTTTAACCAGGCGGCCTGGGGTTCAAA
TCCCCATGAGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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